Publications
Peer-reviewed publications
C. A. Horton, A. M. Alexandari, M. G. B. Hayes, E. Marklund, J. M. Schaepe, A. K. Aditham, N. Shah, P. H. Suzuki, A. Shrikumar, A. Afek, W. J. Greenleaf, R. Gordân, J. Zeitlinger, A. Kundaje, P. M. Fordyce
Short tandem repeats bind transcription factors to tune eukaryotic gene expression
Science (2023)
E. Marklund, Yuxi Ke, W. J. Greenleaf
High-throughput biochemistry in RNA sequence space: from sequence to prediction of structure and function
Nature Reviews Genetics (2023)
E. Marklund, G. Mao, J. Yuan, S. Zikrin, E. Abdurakhmanov, S. Deindl, J. Elf
Sequence specificity in DNA binding is mainly governed by association
Science (2022)
E. Marklund, B. van Oosten, G. Mao, E. Amselem, K. Kipper, A. Sabantsev, A. Emmerich, D. Globisch, X. Zheng, L. C. Lehmann, O. G. Berg, M. Johansson, J. Elf, S. Deindl
DNA surface exploration and operator bypassing during target search
Nature (2020)
K. Kipper, N. Eremina, E. Marklund, S. Tubasum, G. Mao, L. C. Lehmann, J. Elf, S. Deindl
Structure-guided approach to site-specific fluorophore labeling of the lac repressor LacI
PLoS One (2018)
L. C. Lehmann, G. Hewitt, S. Aibara, A. Leitner, E. Marklund, S. L. Maslen, V. Maturi, Y. Chen, D. van der Spoel, J. M. Skehel, A. Moustakas, S. J. Boulton, S. Deindl
Mechanistic Insights into Autoinhibition of the Oncogenic Chromatin Remodeler ALC1
Molecular Cell (2017)
O. G. Berg, A. Mahmutovic, E. Marklund, J. Elf
The helical structure of DNA facilitates binding
Journal of Physics A: Mathematical and Theoretical (2016)
B. R. Doughty, M. M. Hinks, J. M. Schaepe, G. K. Marinov, A. R. Thurm, C. Rios-Martinez, B. E. Parks, Y. Tan, E. Marklund, D. Dubocanin, L. Bintu, W. J. Greenleaf
Single-molecule chromatin configurations link transcription factor binding to expression in human cells
bioRxiv (2024), doi: 10.1101/2024.02.02.578660 (2024).
Y. Ke, E. Sharma, H. K. Wayment-Steele, W. R. Becker, A. Ho, E. Marklund, W. J. Greenleaf
High-Throughput DNA melt measurements enable improved models of DNA folding thermodynamics
bioRxiv (2024) doi: 10.1101/2024.01.08.574731.